2025 Hyper Recent •CC0 1.0 Universal

This work is dedicated to the public domain. No rights reserved.

Access Preprint From Server
July 3rd, 2025
Version: 1
Cardiogen Network
biochemistry
biorxiv

QUANTITATIVE PROTEOMICS OF PLASMA EXTRACELLULAR VESICLES REVEALS A TTR - PLASMINOGEN NETWORK IN ATTR CARDIAC AMYLOIDOSIS

Zaroui, A.Open in Google Scholar•Habert, D.Open in Google Scholar•Vallee, B.Open in Google Scholar•Kharoubi, M.Open in Google Scholar•Fellahi, S.Open in Google Scholar•Vingert, B.Open in Google Scholar•Seve, M.Open in Google Scholar•Cascone, I.Open in Google Scholar•Audard, V.Open in Google Scholar•Itti, E.Open in Google Scholaret al.

Background: Despite recent progress, the prognosis of patients with transthyretin (TTR) cardiac amyloidosis remains poor; this is primarily due to late diagnosis, when irreversible damage has already occurred. Today\'s diagnostic work-up still relies on peripheral tissue or a cardiac biopsy, while circulating levels of TTR or other plasma markers have little diagnostic value. Although extracellular vesicles (EVs, as key mediators of intercellular communication) may reflect disease-specific molecular changes, their protein cargo has not yet been explored in the context of TTR amyloidosis (ATTR) cardiomyopathy. Objectives: To characterize the plasma EV proteome in ATTR cardiomyopathy and identify potential biomarkers for pathophysiological pathways, diagnosis, or prognosis. Methods: We performed mass-spectrometry-based, label-free, proteomic profiling of plasma EVs from 65 patients with hypertrophic cardiomyopathy due to TTR amyloidosis (the ATTR+ group, n=41) or non-amyloid cardiac disease (the ATTR- group, n=24). The groups were matched by age and sex. Results: A distinct protein signature comprising 117 deregulated proteins was identified in EVs from ATTR+ patients. The ATTR+ EVs were enriched in proteins associated with vascular homeostasis, coagulation, and inflammation. At least 18 of these proteins formed an interconnected network centered on plasmin/plasminogen. Notably, EV levels of TTR and plasminogen levels were elevated, while the level of alpha2-antiplasmin (plasmin\'s primary inhibitor) was low. This imbalance is particularly relevant because plasmin is known to promote amyloidogenesis via TTR cleavage. Conclusions: Our findings provide new insights into the molecular mechanisms underlying ATTR cardiomyopathy and suggest that plasma EV proteins are potential diagnostic or prognostic biomarkers and/or therapeutic targets.

Similar Papers

biorxiv
Thu Jul 03 2025
PCNA is a Nucleotide Exchange Factor for the Clamp Loader ATPase Complex
All life requires loading ring-shaped sliding clamp protein complexes onto DNA. The sliding clamp loader is a conserved AAA+ ATPase that binds the sliding clamp, opens the ring, and places it onto DNA. While recent structural work on both the canonical and \'alternative\' clamp loaders has shed light into how these machines perform their task once, it remains unclear how clamp loaders are recycled...
Pajak, J.
•
Landeck, J. T.
•
Liu, X.
•
Anand, K.
...•
Kelch, B. A.
biorxiv
Thu Jul 03 2025
Accurate and Fast Protein Acylation Identification by Eliminating Position Effects of Cyclic Immonium Ions with Stepped HCD
Mass spectrometry (MS)-based proteomics is indispensable for studying post-translational modifications (PTMs). Cyclic immonium (CycIm) ions serve as invaluable diagnostic markers for lysine acylations, yet the principles governing their generation efficiency are poorly understood. Here, we systematically investigate this question and uncover a robust \"position effect\": the generation of immonium...
Zhu, Z.-Y.
•
Mao, P.-Z.
•
Tarn, C.
•
Cao, Y.
biorxiv
Thu Jul 03 2025
A Membrane-Disruptive Action of VBIT-4 Challenges Its Role as a Widely Used VDAC Oligomerization Inhibitor
VDAC, the most abundant protein in the outer mitochondrial membrane, plays a central role in mitochondrial physiology. Its oligomerization has been contemplated to be involved in critical processes such as mtDNA release and apoptosis, yet the underlying molecular mechanisms remain poorly defined. VBIT-4, a small molecule widely used as a VDAC1 oligomerization inhibitor, has seen extensive applicat...
Ravishankar, V.
•
Borges-Araujo, L.
•
Lafargue, E.
•
Byrne, D.
...•
Bergdoll, L.
biorxiv
Thu Jul 03 2025
Organism-wide spatiotemporal profiling of gene expression utilizing a X-CreERT2/Ai9 tracing system
This study utilizes a novel inducible X-CreERT2/Ai9 system to comprehensively delineate the spatial expression landscape of Fermt2, which encodes a key focal adhesion protein Kindlin-2, across organs in mice. We can confirm all known Kindlin-2-expressing cells and identify any previously unknown Kindlin-2-expressing cells and those that do not express Kindlin-2 in all tissues/organs in mice. We ha...
Li, F.
•
Yao, Q.
•
Chen, M.
•
He, S.
...•
Xiao, G.
biorxiv
Thu Jul 03 2025
Quantitative Thermodynamic Characterization of Self-Assembling RNA Nanostructures
Recent developments in RNA nanotechnology have led to the rise in designing specific higher order RNA structures with functional goals in mind, such as drug delivery and immunomodulation. As researchers create RNA nanostructures with the goal of becoming common in the molecular biologists\' toolkit, more investigation is required on the robustness of RNA designs. Primarily, what different molecula...
Aposhian, J. S.
•
Deopa, S. P. S.
•
Horowitz, S.
•
Yesselman, J. D.
biorxiv
Thu Jul 03 2025
Structure and quenching of a bundle-shaped phycobilisome
Cyanobacteria use soluble antenna megacomplexes, phycobilisomes (PBS), to maximize light-harvesting efficiency and small photoswitchable orange carotenoid proteins (OCPs) to down-regulate PBS in high light. Among known PBS morphologies, the one from the basal cyanobacterial genus Gloeobacter still lacks detailed structural characterization. Here, we present the cryo-EM structure of the G. violaceu...
Burtseva, A. D.
•
Slonimskiy, Y. B.
•
Baymukhametov, T. N.
•
Sinetova, M. A.
...•
Sluchanko, N. N.
biorxiv
Thu Jul 03 2025
Toward pharmacologic therapy for glioblastoma: Identifying inhibitors of very long-chain acyl-CoA synthetase 3 (ACSVL3)
Brain tumors, in particular glioblastoma multiforme (GBM), are among the most aggressive and difficult to treat human neoplasms. Even with combined surgery, radiation and chemotherapy, the 5-year survival rate for GBM is only ~7%. Thus, new treatment approaches are needed. We previously found that the fatty acid metabolism enzyme very long-chain acyl-CoA synthetase 3 (ACSVL3) is overproduced in hu...
Clay, E. M.
•
Shi, X.
•
Kolar, E. A.
•
Mody, M.
...•
Watkins, P. A.
biorxiv
Wed Jul 02 2025
Structure and quenching of a bundle-shaped phycobilisome
Cyanobacteria use soluble antenna megacomplexes, phycobilisomes (PBS), to maximize light-harvesting efficiency and small photoswitchable orange carotenoid proteins (OCPs) to down-regulate PBS in high light. Among known PBS morphologies, the one from the basal cyanobacterial genus Gloeobacter still lacks detailed structural characterization. Here, we present the cryo-EM structure of the G. violaceu...
Burtseva, A. D.
•
Slonimskiy, Y. B.
•
Baymukhametov, T. N.
•
Sinetova, M. A.
...•
Sluchanko, N. N.
biorxiv
Wed Jul 02 2025
DNA polymerase α-primase can function as a translesion DNA polymerase
Replication of cellular chromosomes requires a primase to generate short RNA primers to initiate genomic replication. While bacterial and archaeal primase generate short RNA primers, the eukaryotic primase, Pol alpha-primase, contains both RNA primase and DNA polymerase (pol) subunits that function together to form a >20 base hybrid RNA-DNA primer. Interestingly, the DNA Pol1 subunit of Pol alpha ...
Mayle, R.
•
Georgescu, R.
•
O'Donnell, M. E.